Witten (2013) Penalized unsupervised learning with outliers. <i>Statistics and its Interface</i> 6(2): 211-221.
Witten and Noble (2012) On the assessment of statistical significance of three-dimensional colocalization of sets of genomic elements. <i>Nucleic Acids Research</i> 40(9): 3849-3855.
Li, Witten, Johnstone, and Tibshirani (2011) Normalization, testing, and false discovery rate estimation for RNA-sequencing data. <i>Biostatistics</i> 13(3): 523-538.
Clemmensen, Hastie, Witten, and Ersboll (2011) Sparse discriminant analysis. <i>Technometrics</i> 53(4): 406-413.
Witten (2011) Classification and clustering of sequencing data using a Poisson model. <i>Annals of Applied Statistics</i> 5(4): 406-413.
Witten, Friedman, and Simon (2011) New insights and faster computations for the graphical lasso. <i>Journal of Computational and Graphical Statistics</i> 20(4): 892-900.
Witten and Tibshirani (2011) Penalized classification using Fisher’s linear discriminant. <i>Journal of the Royal Statistical Society, Series B</i> 73(5): 753-772.
Witten and Tibshirani (2011) Supervised multidimensional scaling for visualization, classification, and bipartite ranking. <i>Computational Statistics and Data Analysis</i> 55(1): 789-801.
Witten, Tibshirani, Gu, Fire, Lui (2010) Ultra-high throughput sequencing-based small RNA discovery ... <i>BMC Biology</i> 8(1): 58.
Witten and Tibshirani (2010) Survival analysis with high-dimensional covariates. <i>Statistical Methods in Medical Research</i> 19(1): 29-51.
Witten and Tibshirani (2010) A framework for feature selection in clustering. <i>Journal of the American Statistical Association</i> 105(490): 713-726.
Witten, Hastie, and Tibshirani (2009) Discussion of “On consistency and sparsity of principal components ...” <i>Journal of the American Statistical Association</i> 104(486): 698-699.
Witten, Tibshirani, and Hastie (2009) A penalized matrix decomposition, with applications to canonical correlation analysis and principal components. <i>Biostatistics</i> 10(3): 515-534.
Witten and Tibshirani (2009) Covariance-regularized regression and classification for ... <i>Journal of the Royal Statistical Society, Series B</i> 71(3): 615-636.
Witten and Tibshirani (2009). Extensions of sparse canonical correlation analysis ... <i>Statistical Applications in Genetics and Molecular Biology</i> 8(1): Article 28.
Witten and Tibshirani (2008) Testing significance of features by lassoed principal components. <i>Annals of Applied Statistics</i> 2(3): 986-1012.
Tan, Petersen, and Witten (2014) Classification of RNA-Seq Data. Statistical Analysis of Next Generation Sequencing Data. Springer. Editors: Daniel Nettleton and Somnath Data.
Kircher, Witten, et al. (2014) A general framework for estimating the relative pathogenicity of human genetic variants. <i>Nature Genetics</i> 46: 310-315.
Zhao et al. (2013) Is GATA3 expression maintained in regional metastases? A study of paired primary and metastatic ... <i>The American Journal of Surgical Pathology</i> 37(12): 1876- 1881.
Witten and Tibshirani (2013) Scientific research in the era of omics: the good, the bad, and the sloppy. <i>Journal of the American Medical Informatics Association</i> 20(1): 125-127.
